Publications

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Hondula, K.L., M.L. Pace, J.J. Cole, and R.D. Batt. 2014. Hydrogen isotope discrimination in aquatic primary producers: Implications for aquatic food web studies. Aquatic Sciences. 76(2): 217-229.

Wilkinson, G.M., S.R. Carpenter, J.J. Cole, and M.L. Pace. 2014. Use of deep autochthonous resources by zooplankton: Results of a metalimnetic addition of 14C to a small lake. Limnology and Oceanography. 59(3): 986-996.

Yang, Y., G.M. Wilkinson, J.J. Cole, S.A. Macko, and M.L. Pace. 2014. Assigning hydrogen, carbon, and nitrogen isotope values for phytoplankton and terrestrial detritus in aquatic food web studies. Inland Waters. 4:233-242.

Carpenter, S.R., W.A. Brock, J.J. Cole, and M.L. Pace. 2014. A new approach for rapid detection of nearby thresholds in ecosystem time series. Oikos 123: 290-297.

Hondula, K.L., and M.L. Pace. 2014. Macroalgal support of cultured hard clams in a low nitrogen coastal lagoon. Marine Ecology Progress Series 498: 187-201.

Gephart, J.A., M.L. Pace, P. D’Odorico. 2014. Freshwater savings from marine protein consumption. Environmental Research Letters 9: 014005 (8 pages).

Cardoso, S.J., A. Enrich-Prast, M.L. Pace, and F. Roland. 2014. Do models of organic carbon mineralization extrapolate to warmer tropical sediments?. Limnology and Oceanography. 59(1): 48-54.

Batt, R.D., S.R. Carpenter, J.J. Cole, M.L. Pace, and R.A. Johnson. 2013. Changes in ecosystem resilience detected in automated measures of ecosystem metabolism during a whole-lake manipulation. Proceedings of the National Academy of Sciences. 110(43): 17398-17403.

Kaushal, S.S., G.E. Likens, R.M. Utz, M.L. Pace, M. Grese, and M. Yepsen. 2013. Increased river alkalinization in the Eastern U.S.. Environmental Science & Technology. 47(18): 10302-10311.

McGlathery, K.J., M.A. Reidenbach, P. D'Odorico, S. Fagherazzi, M.L. Pace, and J.H. Porter. 2013. Nonlinear dynamics and alternative stable states in shallow coastal systems. Oceanography. 26(3): 220-231.

Solomon, C.T., D.A. Bruesewitz, D.C. Richardson, K.C. Rose, M.C. Van de Bogert, P.C. Hanson, T.K. Kratz, B. Larget, R. Adrian, B.L. Babin, C.Y. Chui, D.P. Hamilton, E.E. Gaiser, S. Hendricks, V. Istvánovics, A. Laas, D.M. O'Donnell, M.L. Pace, E. Ryder, P.A. Staehr, T. Torgersen, M.J. Vanni, K.C. Weathers, and G. Zhu. 2013. Ecosystem respiration: drivers of daily variability and background respiration in lakes around the globe. Limnology and Oceanography. 58(3): 849-866.

Seekell D.A., M.L. Pace, L.J. Tranvik, and C. Verpoorter. 2013. A fractal-based approach to lake size-distributions. Geophysical Research Letters. 40:517-521.

Seekell D.A., T.J. Cline, S.R. Carpenter, and M.L. Pace. 2013. Evidence of alternate attractors from a whole-ecosystem regime shift experiment. Theoretical Ecology. 6:385-394.

Batt R.D., W.A. Brock, S.R. Carpenter, J.J. Cole, M.L. Pace ML, and D.A. Seekell. 2013. Asymmetric response of early warning indicators of phytoplankton transitions to and from cycles. Theoretical Ecology. 6:285-293

Wilkinson, G.M., S.R. Carpenter, J.J. Cole, M.L. Pace, and C. Yang. 2013. Terrestrial support of pelagic consumers: patterns and variability revealed by a multilake study. Freshwater Biology. 58: 2037-2049. doi: 10.1111/fwb.12189

Pace, M.L., S.R. Carpenter, R.A. Johnson, and J.T. Kurtzweil. 2013. Zooplankton provide early warnings of a regime shift in a whole lake manipulation. Limnology and Oceanography. 58(2): 525-532. doi: 10.4319/lo.2013.58.2.0525

Wilkinson, G.M., M.L. Pace, and J.J. Cole. 2013. Terrestrial dominance of organic matter in north temperate lakes. Global Biogeochemical Cycles. 27. doi: 10.1029/2012GB004453

Van de Bogert, M.C., D.L. Bade, S.R. Carpenter, J.J. Cole, M.L. Pace, P.C. Hanson, and O.C. Langman. 2012. Spatial heterogeneity strongly affects estimates of ecosystem metabolism in two north temperate lakes. Limnology and Oceanography. 57(6): 1689-1700. doi: 10.4319/lo.2012.57.6.1689

Seekell, D.A., S.R. Carpenter, T.J. Cline, and M.L. Pace. 2012. Conditional heteroskedasticity forecasts regime shift in a whole-ecosystem experiment. Ecosystems. 15: 741-747. doi: 10.1007/s10021-012-9542-2

Canham, C.D., M.L. Pace, K.C. Weathers, E.W. McNeil, B.L. Bedford, L. Murphy, and S. Quinn. 2012. Nitrogen deposition and lake nitrogen concentrations: a regional analysis of terrestrial controls and aquatic linkages. Ecosphere. http://dx.doi.org/10.1890/ES12-00090.1

Brosseau, C.J., T.J. Cline, J.J. Cole, J.R. Hodgson, M.L. Pace, and B.C. Weidel. 2012. Do Daphnia use metalimnetic organic matter in a north temperate lake? An anlysis of vertical migration. Inland Waters. 2: 193-198. doi: 10.5268/IW-2.4.513

Batt, R.D., S.R. Carpenter, J.J. Cole, M.L. Pace, T.J. Cline, R.A. Johnson, and D.A. Seekell. 2012. Resources supporting the food web of a naturally productive lake. Limnology and Oceanography. 57(5): 1443-1452. doi: 10.4319/lo.2012.57.5.1443

Pace, M.L, I. Reche, J.J. Cole, A. Fernández-Barbero, I.P. Mazuecos, Y.T. Prairie. 2012.  pH change induces shifts in the size and light absorption of dissolved organic matter.  Biogeochemistry. 108: 109-118.

Carlsson, N.O.L., H. Bustamante, D.L. Strayer, and M.L. Pace. 2011. Biotic resistance on the increase: native predators structure invasive zebra mussel populations. Freshwater Biology. 56: 1630-1637.

Seekell, D.A., P. D'Odorico, M.L. Pace. 2011. Virtual water transfers unlikely to redress inequality in global water use. Environmental research Letters. DOI: 10.1088/1748-9326/6/2/024017.

Seekell, D.A. and M.L. Pace. 2011. Climate change drives warming in the Hudson River Estuary, New York. Journal of Environmental Monitoring. 13: 2321-2327.

Seekell, D.A., S.R. Carpenter, M.L. Pace. 2011. Conditional heteroscedasticity as a leading indicator of ecological regime shifts. The American Naturalist. 178: 442-451.

Coloso, J.J., J.J. Cole, M.L. Pace. 2011. Difficulty in discerning drivers of lake ecosystem metabolism with high-frequency data. Ecosystems. 14: 935-948.

Carpenter, S.R., J.J. Cole, M.L. Pace, R. Batt, W.A. Brock, T. Cline, J. Coloso, J.R. Hodgson, J.F. Kitchell, D.A. Seekell, L. Smith, B. Weidel. 2011. Early warnings of regime shifts: a whole-ecosystem experiment. Science. 332: 1079-1082.

Solomon, C.T., S.R. Carpenter, M.K. Clayton, J.J. Cole, J.J. Coloso, M.L. Pace, M.J. Vander Zanden, B.C. Weidel. 2011. Terrestrial, benthic, and pelagic resource use in lakes: results from a three-isotope Bayesian mixing model.  Ecology. 92: 1115-1125.

Melack, J.M., A.C. Finzi, D. Siegel, S. MacIntyre, C.E. Nelso, A.K. Aufdenkampe, and M.L. Pace.   2011.  New ways of seeing and measuring ecosystems advance understanding of biogeochemical cycles.  Frontiers in Ecology and Environment. 9: 37-43.

Cole, J.J., S.R. Carpenter, J. Kitchell, M.L. Pace, C. Solomon, and B. Weidel.  2011.  Strong evidence for terrestrial support of zooplankton in small lakes based on stable isotopes of carbon, nitrogen, and hydrogen.  Proceedings of the National Academy of Sciences USA. 108:1975-1980. 

Seekell D.A., and M.L. Pace.  2011.  Does the Pareto distribution adequately describe the size-distribution of lakes?  Limnology and Oceanography. 56:350-356.

Coloso, J.J., J.J. Cole, and M.L.Pace. 2011. Short-term variation in thermal stratification complicates estimation of lake metabolism.  Aquatic Sciences. 73: 305-315.

De Vicente, I., E. Ortega-Retuerta, I.P-Mazuecos, M.L. Pace, J.J. Cole, and I. Reche.  2010.  Variation in transparent exopolymer particles in relation to biological and chemical factors in two contrasting lake districts.  Aquatic Sciences. 72:443-453.

Kaushal, S.S., G. E. Likens, N. A. Jaworski, M.L. Pace, A M. Sides, D. Seekell, K.T. Belt, D.T. Secor, and R. Wingate.  2010.  Rising stream and river temperatures in the United States.  Frontiers in Ecology and Environment. 10: 461-466.

Pace, M.L, D.L. Strayer, D. Fischer, and H.M. Malcom.  2010.  Increased mortality of an invasive mussel associated with recovery of native zooplankton.  Ecosphere Vol. 1, Article 3, 10 pages. 

Pace, M.L., S.E. Hampton, K.E. Limburg, E.M. Bennett, E.M. Cook, A.E. Davis, J.M. Grove, K.Y. Kaneshiro, S.L. LaDeau, G.E. Likens, D. McKnight, D.C. Richardson, and D.L. Strayer.  2010.  Communicating with the public: opportunities and rewards for individual ecologists.  Frontiers in Ecology and Environment. 8: 291-298.

Kaushal, S.S., M.L. Pace, P.M. Groffman, L.E. Band, K.T. Belt, P.M. Mayer, and C. Welty.  2010.  Land use and climate variability amplify contaminant pulses.  EOS. 91: 221-228.

Cole, J.J., D.L. Bade, D. Bastviken, S.R. Carpenter, M.L. Pace, M. Van de Bogert. 2010. Multiple approaches to estimating air-water gas exchange in small lakes. Limnology and Oceanography Methods. 8: 285-293.

Findlay, S., W.H. McDowell, D. Fischer, M.L. Pace, N. Caraco, S.S. Kaushal, and K.C. Weathers.  2010.  Total carbon analysis may overestimate organic carbon content of fresh waters in the presence of dissolved inorganic carbon.  Limnology and Oceanography Methods. 8: 196-201.

Carpenter, S.R., J.J. Cole, J.F. Kitchell, and M.L. Pace.  2010.  Trophic cascades in lakes: lessons and prospects, pp. 59-69.  In: Trophic Cascades, Edited by J. Terbough and J.A. Estes.  Island Press. 

Carpenter, S.R., W.A. Brock, J.J. Cole and M.L. Pace. 2009. Leading indicators of phytoplankton transitions caused by resource competition. Theoretical Ecology. 2: 139-150.

Solomon, C.T., J.J. Cole, R. Doucette, M.L. Pace, N.D. Preston, L.E. Smith, B.C. Weidel.  2009.  The influence of environmental water on the hydrogen stable isotope ratio in aquatic consumers.  Oecologia. 161: 313-324.

Canham, C.D., and M.L. Pace.  2009.  A spatially-explicit, mass-balance analysis of watershed-scale controls on lake chemistry, pp 209-233 In M. Shili, S. Carstenn, and M. Nungesser (eds.), Real world ecology: large-scale and long-term case studies and methods.  Springer-Verlag.   

Weidel, B.C., S.R. Carpenter, J.J. Cole, J. Hodgson, J.F Kitchell, M.L Pace, and C.T. Solomon.  2008.  Carbon sources supporting fish growth in north temperate lakes.  Aquatic Sciences. 70: 446-458

Preston, N.D., S.R. Carpenter, J.J. Cole, and M.L. Pace.  2008.  Airborne carbon deposition on a remote forested lake.  Aquatic Sciences. 70: 213-224.

Bastviken, D., J. J. Cole, M. L. Pace, and M. C. Van de Bogert.  2008.  Fates of methane from different lake habitats: Connecting whole-lake budgets and CH4 emissions. Journal of Geophysical Research DOI:10.1029/2007JG000608..

Coloso, J.J., J.J. Cole, P.C. Hanson, M.L. Pace.  2008.  Depth-integrated, continuous, estimates of metabolism in a clear water lake.  Canadian Journal of Fisheries and Aquatic Science 65: 712-722.

Strayer, D.L., M.L. Pace, N.F. Caraco, J.J. Cole, and S. Findlay.  2008.  Hydrology and grazing jointly control a large-river food web.  Ecology 89:12-18

Solomon, C.T., S.R. Carpenter, J.J. Cole, and M.L. Pace.  2008.  Support of benthic invertebrates by detrital resource and current autochthonous primary production: results from a whole lake 13C addition.  Freshwater Biology 53: 42-54.

del Giorgio, P.A. and M.L. Pace.  2008.  Relative independence of dissolved organic carbon  processing and transport in a large temperature river:  the Hudson River as both pipe and reactor.  Limnology and Oceanography 53: 185-197.

Carpenter, S.R., W.A. Brock, J.J. Cole, J.F. Kitchell, and M.L. Pace.  2008.  Leading indicators of trophic cascades.  Ecology Letters 11: 128-138.

Weidel, B.C., T. Ushikubo, S.R. Carpenter, N.T. Kita, J.J. Cole, J.F. Kitchell, M.L. Pace, and J.W. Valley.  2007.  Diary of a buegill (Lempomis macrochirus): daily δ13C and δ18O records in otoliths by ion microprobe.  Canadian Journal of Fisheries and Aquatic Sciences 64: 1641-1645.

Pace, M.L., S.R. Carpenter, J.J. Cole, J. Coloso., J.F. Kitchell, J.R. Hodgson, J.J. Middelburg, N.D. Preston, C.T. Solomon, B. Weidel. 2007.  Does terrestrial organic carbon subsidize the plankton food web in a clear-water lake?  Limnology and Oceanography 52: 2177-2189.

Van de Bogert, M.C., S.R. Carpenter, J.J. Cole, and M.L. Pace.  2007.  Assessing benthic and pelagic metabolism using free water measurements.  Limnology and Oceanography Methods 5:145-155.

Bade, D.L., S.R. Carpenter, J.J. Cole, M.L. Pace, E.S. Kritzberg, M.C. Van De Bogert, R.M. Cory, and D.M. McKnight.  2007.  Sources and fates of dissolved organic carbon in lakes as determined by whole-lake carbon isotope additions.  Biogeochemistry 84: 115-129.   

Chapin, F.S. Chapin, III, G.M Woodwell, J.T. Randerson, E.B. Rastetter, G.M. Lovett, D.D. Baldocchi, D.A. Clark, M.E. Harmon, D.S. Schimel, R. Valentini, C. Wirth, J.D. Aber, J.J. Cole, M.L. Goulden, J.W. Harden, M. Heimann, R.W. Howarth, P.A. Matson, A.D. McGuire, J.M. Melillo, H.A. Mooney, J.C. Neff, R.A. Houghton, M.L. Pace, M.G. Ryan, S.W. Running, O.E. Sala, W.H. Schlesinger, and E.-D. Schulze.  2006.  Reconciling carbon-cycle concepts, terminology, and methods.  Ecosystems 9: 1041-1050.

del Giorgio, P.A., M.L. Pace, D. Fischer.  2006.  The relationship of bacterial growth efficiency to spatial variation in bacterial activity in the Hudson River.  Aquatic Microbial Ecology 45: 55-67.

Strayer, D.L, V.T. Eviner, J.M. Jeschke, and M.L. Pace.  2006.  Understanding the long-term effects of species invasions.  Trends in Ecology and Evolution 21: 645-651.

Bade, D.L., M.L. Pace, J.J. Cole, S.R. Carpenter.  2006.  Can algal photosynthetic inorganic carbon isotope fractionation be predicted in lakes using existing models? Aquatic Sciences 68: 142-153. 

Kritzberg E.S., J.J. Cole, M.L. Pace, and W. Granéli.  2006.  Bacterial growth on allochthonous carbon in humic and nutrient enriched lakes: Results from whole lake experiments. Ecosystems 9: 489-499.

Cole, J.J., M.L. Pace, S.R. Carpenter, M.C. Van De Bogert, J.F. Kitchell, and J.R. Hodgson.  2006.  Differential support of lake food webs by three types of terrestrial carbon. Ecology Letters 9: 558-568.

Marino, R., R.W. Howarth, F. Chan, M.L. Pace, and G.E. Likens.  2006.  Experimental tests of ecological constraints on planktonic nitrogen fixation in saline estuaries I. Nutrient and trophic controls.  Marine Ecology Progress Series 309: 25-39.

Chan, F., R.L. Marino, R.W. Howarth, and M.L. Pace.  2006.  Experimental tests of ecological constraints on planktonic nitrogen fixation in estuaries II. Mechanisms of trophic control.  Marine Ecology Progress Series 309: 41-53.

Lovett, G.M., J.J. Cole, and M.L. Pace.  2006   Is net ecosystem production equal to carbon storage?  Ecosystems 9: 152-155.

Pace, M.L. and D.J.Lonsdale. 2006.  Ecology of the Hudson zooplankton community, pp. 217-229.  In J.S. Levinton and J.R. Waldman (eds.), The Hudson River Estuary.  Cambridge University Press

Maranger, R.J., C.D. Canham, M.L. Pace, M.J. Papaik. 2006.  A spatially explicit model of iron loading to lakes.  Limnology and Oceanography 51: 247-256.

Carpenter, S.R., J.J. Cole, M.L. Pace, M. Van de Bogert, D.L. Bade, D. Bastviken, C. Gille, J.R. Hodgson, J.F. Kitchell, and E.S. Kritzberg.  2005.  Ecosystem subsidies: Terrestrial support of aquatic food webs from 13C addition to contrasting lakes.  Ecology 86: 2737-2750.

Strayer, D. L., E. A. Blair, N. F. Caraco, J. J. Cole, S. Findlay, W. C. Nieder, and M. L. Pace.  2005.  Interactions between alien species and restoration of large-river ecosystems.   Archiv für Hydrobiologie Supplementband 155: 133-145.

Maranger, R.J., Pace, M.L., P.A. del Giorgio, N.F. Caraco, and J.J. Cole.  2005.  Longitudinal spatial patterns of bacterial production and respiration in a large river-estuary: Implications for ecosystem carbon consumption.  Ecosystems 8: 318-330.

Kritzberg, E.S., J.J. Cole, M.L. Pace, and W. Granéli.  2005.  Does autochthonous primary production drive variability in bacterial metabolism and growth efficiency in lakes dominated by terrestrial C inputs?  Aquatic Microbial Ecology 38: 103-111.

Palmer, M.A., E.S. Bernhardt, E.A. Chornesky, S.L. Collins, A.P. Dobson, C.S. Duke, B.D. Gold, R. Jacobson, S. Kingsland, R. Kranz, M.J. Mappin, M.L. Martinez, F. Micheli, J.L. Morse, M.L.  Pace, M. Pascual, S. Palumbi, O. J. Reichman, A. Townsend, and M.G. Turner.  2005.  Ecological science and sustainability for the 21st Century.  Frontiers in Ecology and the Environment 3: 4-11.

Pace, M.L., and Y.T. Prairie.  2005.  Respiration in lakes, pp. 103-121 In P.J. le. B. Williams and P.A. del Giorgio (eds.).  Respiration in Aquatic Ecosystems.  Oxford University Press.

Bastviken, D., J. Cole, M.L. Pace, and L. Tranvik.  2004.  Methane emissions from lakes: Dependence on lake characteristics, two regional assessments, and a global estimate.  Global Biogeochemical Cycles 18: GB4009 10.1029/2004GB002238.

Chan, F., M.L. Pace, R.W. Howarth, and R.M. Marino.  2004.  Bloom formation in heterocystic nitrogen-fixing cyanobacteria: the dependence of colony size and zooplankton grazing.  Limnology and Oceanography 49: 2171-2178.

Canham, C.D., M.L. Pace, M.J. Papaik, A.G.B. Primack, K.M. Roy, R.J. Maranger, R.P. Curran, and D.M. Spada. 2004.  A spatially-explicit watershed-scale analysis of dissolved organic carbon in Adirondack lakes. Ecological Applications 14: 839-854.

Palmer, M., E. Bernhardt, E. Chornesky, S. Collins, A. Dobson, C. Duke, B. Gold, R. Jacobsen, S. Kingsland, R. Kranz, M. Mappin, M.L. Martinez, F. Micheli, J. Morse, M. Pace, M. Pascual, S. Palumbi, O.J. Reichman, A. Simons, A. Townsend, and M. Turner.  2004.  Ecology for a crowded planet.  Science 304: 1251-1252.

Kritzberg, E.S., J.J. Cole, M.L. Pace, W. Granéli, and D.L. Bade.  2004.  Autochthonous versus allochthonous carbon sources to bacteria – Results from whole lake 13C addition experiments.  Limnology and Oceanography 49: 588-596.

Pace, M.L., P. del Giorgio, D. Fischer, R. Condon, and H. Malcom.  2004.  Estimates of bacterial production using the leucine incorporation method are influenced by differences in protein retention of microcentrifuge tubes.  Limnology and Oceanography Methods 2: 55-61.

Pace, M.L., J.J. Cole, S.R. Carpenter, J.F. Kitchell, J.R. Hodgson, M. Van de Bogert, D.L. Bade, E.S. Kritzberg, and D. Bastviken.  2004.  Whole lake carbon-13 additions reveal terrestrial support of aquatic food webs.  Nature 427: 240-243.

Pace, M.L.  2003.  The utility of simple models in ecosystem science, pp. 49-62.  In C.D. Canham, J.J. Cole, and W.D. Lauenroth (eds.), Models in ecosystem science.  Princeton University Press.

Duarte, C.M., J. Amthor, D. DeAngelis, L.A. Joyce, R. Maranger, M.L. Pace, J. Pastor, S.  Running.  2003.  The limits to models in ecology, pp. 437-451.  In C.D. Canham, J.J. Cole, and W.D. Lauenroth (eds.), Models in ecosystem science.  Princeton University Press.

Houser, J.N., D.L. Bade, J.J. Cole, and M.L. Pace.  2003.  The dual influence of dissolved organic carbon on hypolimnetic metabolism: organic substrate and photosynthetic inhibition.  Biogeochemistry 64: 247-269.

Marino, R., F. Chan, R.W. Howarth, M. Pace, and G.E. Likens.  2002.  Ecological and biogeochemical interactions constrain planktonic nitrogen fixation in estuaries.  Ecosystems 5: 719-725.

Cole, J.J., S.R. Carpenter, J.F. Kitchell, and M.L. Pace.  2002.  Pathways of organic C utilization in small lakes: Results from a whole-lake 13C addition and coupled model.  Limnology and Oceanography 47:1664-1675.

Reche, I., and M.L. Pace.  2002.  Linking dynamics of dissolved organic carbon in a forested lake with environmental factors.  Biogeochemistry 61: 21-36.

Pace, M.L. and J.J. Cole.  2002.  Synchronous variation of dissolved organic carbon in lakes.  Limnology and Oceanography 47: 333-342.

Carpenter, S.R., J.J. Cole, J.R. Hodgson, J.F. Kitchell, M.L. Pace, D. Bade, K.L. Cottingham, T.E. Essington, J.N. Houser, and D.E. Schindler.  2001.  Trophic cascades, nutrients, and lake productivity: Whole-lake experiments.  Ecological Monographs 71: 163-186.

Pace, M.L.  2001.  Getting it right and wrong: Extrapolations across experimental scales, pp. 157-177.  In R.H. Gardner, W.M. Kemp, V.S. Kennedy, and J.E. Peterson (eds.) Scaling relations in experimental ecology.  Columbia University Press, New York. 

Pace, M.L.  2001.  Prediction and the aquatic sciences.  Canadian Journal of Fisheries and Aquatic Science 58: 63-72.

Cole, J.J., M.L. Pace, S.R. Carpenter, and J.F. Kitchell.  2000.  Persistence of net heterotrophy in lakes during nutrient addition and food web manipulation.  Limnology and Oceanography 45: 1718-1730.

Reche, I., M.L. Pace, and J. J. Cole.  2000.  Photobleaching of colored dissolved organic matter: modeled effects of solar wavebands in lake ecosystems.  Ecosystems 3: 419-432.

Pace, M.L., and J.J. Cole.  2000.  Effects of whole lake manipulations of nutrient loading and food web structure on planktonic respiration.  Canadian Journal of Fisheries and Aquatic Science 57: 487-496.

Caraco, N.F., J.J. Cole, S.E.G. Findlay, D.T. Fischer, G.G. Lampman, M.L. Pace, D.L. Strayer.  2000.  Dissolved oxygen declines in the Hudson River associated with the invasion of the zebra mussel (Dreissena polymorpha).  Environmental Science and Technology 34: 1204-1210.

Post, D.M., M.L. Pace, N.G. Hairston, Jr.  2000.  Ecosystem size determines food-chain length in lakes.  Nature 405: 1047-1049.

Pace, M.L., J.J. Cole, S.R. Carpenter, and J.F. Kitchell.  1999.  Trophic cascades revealed in diverse ecosystems. Trends in Ecology and Evolution 14: 483-488.

Carpenter, S.R., J.F. Kitchell, J.J. Cole, and M.L. Pace.  1999. Predicting responses of chlorophyll and primary production to changes in phosphorus, grazing, and dissolved organic carbon (Reply to comment by Nürnberg).  Limnology and Oceanography 44: 1179-1182.

Strayer, D.L., N.F. Caraco, J.J. Cole, S. Findlay, and M.L. Pace.  1999.  Transformation of freshwater ecosystems by bivalves: a case study in the Hudson River.  BioScience 49: 19-27.

Limburg, K.E., M.L. Pace, K.K. Arend.  1999.  Growth and recruitment of larval Morone in relation to food availability and temperature in the Hudson River.  Fisheries Bulletin 97: 80-91.

Reche, I., M.L. Pace, and J.J. Cole.  1999.  Relationship of trophic and chemical conditions to photobleaching of dissolved organic matter in lake ecosystems.  Biogeochemistry 44: 259-280.

Williamson, C.E., D.P. Morris, M.L. Pace, and O.G. Olson.  1999.  Dissolved organic carbon and nutrients as regulators of lake ecosystems: Resurrection of a more integrated paradigm.  Limnology and Oceanography 44: 795-803.

Findlay, S., M. L. Pace, D.T. Fischer. 1998.  Response of heterotrophic bacteria to the zebra mussel invasion of the tidal freshwater Hudson River.   Microbial Ecology 36: 131-140.

Reche, I., M.L. Pace, and J.J. Cole.  1998.  Interactions of photobleaching and inorganic nutrients in determining bacterial growth on colored dissolved organic carbon.  Microbial Ecology 36: 270-280.

Caraco, N.F., G. Lampman, J.J. Cole, K.E. Limburg, M.L. Pace, D. Fischer.  1998.  Microbial assimilation of DIN in a nitrogen rich estuary: Implication for food quality and isotope studies.  Marine Ecology Progress Series 167: 59-71.

Pace, M.L. and P.M. Groffman.  1998.   Introduction: needs and concerns in ecosystem science, pp. 1-6.  In M.L. Pace and P.M. Groffman (eds.) Successes, Limitations, and Frontiers in Ecosystem Science.  Springer-Verlag.

Groffman, P.M. and M.L. Pace.  1998.  Synthesis: What kind of discipline is this, anyhow?, pp. 473-481.  In M.L. Pace and P.M. Groffman (eds.) Successes, Limitations, and Frontiers in Ecosystem Science.  Springer-Verlag.

Pace, M.L., J.J. Cole, and S.R. Carpenter.  1998.  Trophic cascades and compensation: differential responses of microzooplankton in whole lake experiments.  Ecology 79: 138-152.

Pace, M.L., S.E.G. Findlay, and D. Fischer.  1998.  Effects of an invasive bivalve on the zooplankton community of the Hudson River.  Freshwater Biology 39: 103-116.

Carpenter, S.R., J.J. Cole, J.F. Kitchell, and M.L. Pace.  1998.  Impact of dissolved organic carbon, phosphorus, and grazing on phytoplankton biomass and production in experimental lakes.  Limnology and Oceanography 43: 73-80.

Pace, M.L. and P.M. Groffman.  1998.  Successes, limitation, and frontiers in ecosystem science: A report on the 7th Cary Conference.  Ecosystems 1: 137-142.

Cole, J.J. and M.L. Pace.  1998.  Hydrologic variability of small, northern lakes measured by the addition of tracers. Ecosystems 1: 310-320.

Carpenter, S.R., J.J. Cole, T.E. Essington, J.R. Hodgson, J.N. Houser, J.F. Kitchell, and M.L. Pace.  1998.  Evaluating alternative explanations in ecosystem experiments.  Ecosystems 1: 335-340.

Carpenter, S.R., and M.L. Pace.  1997.  Dystrophy and eutrophy in lake ecosystems: implications of fluctuating inputs.  Oikos 78: 3-14.

Caraco, N.F., J.J. Cole, P.A. Raymond, D.L. Strayer, M.L. Pace, S.E.G. Findlay, and D.T. Fischer. 1997.  Zebra mussel invasion in a large, turbid, river: phytoplankton response to increased grazing.  Ecology 78: 588-602.

Cottingham, K.L., S.E. Knight, S.R. Carpenter, J.J. Cole, M.L. Pace, and A.E. Wagner.  1997.  Response of phytoplankton and bacteria to nutrients and zooplankton: a mesocosm experiment.  Journal of Plankton Research 29: 995-1010.

Limburg, K.E., M.L. Pace, D. Fischer, and K.K. Arend.  1997.  Consumption, selectivity, and use of zooplankton by larval striped bass and white perch in a seasonally pulsed estuary.  Transactions of the American Fisheries Society 126: 607-621.

Moore, M.V., M.L. Pace, J.R. Mather, P.S. Murdoch, R.W. Howarth, C.L. Folt, C.Y. Chen, H.F. Hemond, P.A. Flebbe, and C.T. Driscoll.  1997.  Potential effects of climate change on freshwater ecosystems of the New England/Mid-Atlantic region. Hydrological Processes 11: 925-947.

Schindler, D.E., S.R. Carpenter, J.J. Cole, J.F. Kitchell, and M.L. Pace.  1997.  Influence of food web structure on carbon exchange between lakes and the atmosphere.  Science 277: 248-251.

Pace, M.L, and J.J. Cole.  1996.  Regulation of bacteria by resources and predation tested in whole lake experiments.  Limnology and Oceanography 41: 1448-1460.

Felip, M., M.L. Pace, and J.J. Cole.  1996.  Regulation of planktonic bacterial growth rates: the effects of temperature and resources.  Microbial Ecology 31: 15-28.

Findlay, S., M.L. Pace, and D. Fischer.  1996.  Spatial and temporal variability in the lower food web of the tidal freshwater Hudson River.  Estuaries 19: 866-893.

Strayer, D.L., J. Powell, P. Ambrose, L.C. Smith, M.L. Pace, and D.T. Fischer.  1996.  Arrival, spread, and early dynamics of a zebra mussel (Dreissena polymorpha) population in the Hudson River estuary.  Canadian Journal of Fisheries and Aquatic Science 53: 1143-1149.

Christensen, D.L., S.R. Carpenter, J. J. Cole, K.L. Cottingham, S.E. Knight, J. P. LeBouton, D.E. Schindler, N. Voichick, J.J. Cole, and M.L. Pace.  1996. Pelagic responses to changes in dissolved organic carbon following division of a seepage lake. Limnology and Oceanography 41: 553-559.

Carpenter, S.R., D.L. Christensen, J.J. Cole, K.L. Cottingham, X. He, J.R. Hodgson, J.F. Kitchell, S.E. Knight, M.L. Pace, D.M. Post, D.E. Schnidler, N. Voichick.  1995.  Biological control of eutrophication in lakes.  Environmental Science and Technology 29: 784-785.

Cole, J.J., and M.L. Pace.  1995.  Why measure bacterial production? A reply to the comment by Jahnke and Craven.  Limnology and Oceanography 40: 441-444.

Cole, J.J., and M.L. Pace.  1995.  Bacterial production in oxic and anoxic freshwaters.  Limnology and Oceanography 40: 1019-1027.

Pace, M.L., S.R. Carpenter, P.A. Soranno.  1995.  Population variability in experimental ecosystems, p. 61-71.  In C. Jones and J. Lawton [eds.] Linking species and ecosystems.  Chapman & Hall.

Baines, S.B., and M.L. Pace.  1994.  Sinking fluxes along a trophic gradient: patterns and their implications for the fate of primary production.  Canadian Journal of Fisheries and Aquatic Science 51: 25-36.

Baines, S.B., M.L. Pace, D.M. Karl.  1994.  Why does the relationship between sinking flux and planktonic primary production differ between lakes and the ocean?  Limnology and Oceanography 39: 213-226.

Pace, M.L., and J.J. Cole.  1994.  Primary and bacterial production: are they coupled over depth?  Journal of Plankton Research 16: 661-672.

Pace, M.L., and D. Vaqué.  1994.  The importance of Daphnia in determining mortality rates of protozoans and rotifers in lake.  Limnology and Oceanography 985-996.

Pace, M.L., and J.J. Cole.  1994.  Comparative and experimental approaches to top-down and bottom-up regulation of bacteria.  Microbial Ecology 28: 181-193.

Vézina, A., and M.L. Pace.  1994.  An inverse model analysis of planktonic food webs in experimental lakes. Canadian Journal of Fisheries and Aquatic Science 51: 2034-2044.

Cyr, H., and M.L. Pace.  1993.  Magnitude and patterns of herbivory in aquatic and terrestrial ecosystems.  Nature 361: 148-150.

Cyr, H., and M.L. Pace.  1993.  Allometric theory: Extrapolations from individuals to communities.  Ecology 74: 1234-1245.

Pace, M.L., S.B. Baines, H. Cyr, and J.A. Downing.  1993.  Relationships among early life stages of Morone americana and Morone saxatilis from long term monitoring of the Hudson River Estuary.  Canadian Journal of Fisheries and Aquatic Science 50: 1976-1985.

Cole, J.J., M.L. Pace, N.F. Caraco, and G.S. Steinhart.  1993.  Bacterial biomass and cell size distributions in lakes: more and larger cells in anoxic waters.  Limnology and Oceanography 38: 1627-1632.

Pace, M.L.  1993.  Forecasting ecological responses to global change: The need for large-scale comparative studies, p. 356-363.  In P.M. Karieva, J.G. Kingsolver, and R.B. Huey [eds.]  Biotic interactions and global change.  Sinauer.

Pace, M.L.  1993.  Heterotrophic microbial processes, p. 252-277.  In S.R. Carpenter and J.F. Kitchell [eds.]  The trophic cascade in lake ecosystems.  Cambridge University Press.

Cole, J.J., B. Peierls, N.F. Caraco, and M.L. Pace.  1993.  Nitrogen loading of rivers as a human-driven process, p. 141-157.  In M.J. McDonnell and S.T.A. Pickett [eds.] Humans as components of ecosystems.  Springer-Verlag.

Vaqué, D., and M.L. Pace. 1992.  Grazing on bacteria by flagellates and cladocerans in lakes of contrasting food web structure. Journal of Plankton Research 14: 307-321.

Cyr, H., and M.L. Pace.  1992.  Grazing by zooplankton and its relationship to community structure. Canadian Journal of Fisheries and Aquatic Science 49: 1455-1465.

Cyr, H., J.A. Downing, S. Lalonde, S. Baines, and M.L. Pace.  1992.  Sampling larval fish populations: choice of sample number and size. Transactions of the American Fisheries Society 121: 356-368.

Pace, M.L., S.E.G. Findlay, and D. Lints. 1992.  Zooplankton in advective environments: The Hudson River community and a comparative analysis. Canadian Journal of Fisheries and Aquatic Science 49: 1060-1069.

Findlay, S.E.G., M.L. Pace, and D. Lints.  1992.  Bacterial metabolism of organic carbon in the tidal freshwater Hudson Estuary.  Marine Ecology Progress Series 89: 147-153.

Vaqué, D., M.L. Pace, S.E.G. Findlay, and D. Lints.  1992.  Fate of bacterial production in a heterotrophic ecosystem: Grazing by protists and metazoans in the Hudson Estuary. Marine Ecology Progress Series 89: 155-163.

Lints, D., S.E.G. Findlay, and M.L. Pace.  1992.  Biomass and energetics of consumers the lower food web of the Hudson River, p. 446-457.  In C.L. Smith [ed.] Estuarine research in the 1980s.  SUNY Press.

Pace, M.L., S.E.G. Findlay, D. Lints.  1991.  Variance in zooplankton samples: evaluation of a predictive model.  Canadian Journal of Fisheries and Aquatic Science 48: 146-151. 

Pace, M.L.  1991.  Comparative and experimental approaches to the study of microbial food webs.  Journal of Protozoology 38: 87-92.

Peierls, B., N.F. Caraco, M.L. Pace, J.J. Cole.  1991.  River nitrogen export linked to human population density.  Nature 350: 386-387.

Findlay, S.E.G., M. L. Pace, D. Lints, J.J. Cole, N.F. Caraco, and B. Peierls. 1991.  Weak coupling of bacterial and algal production in a heterotrophic ecosystem, the Hudson Estuary.  Limnology and Oceanography 36: 268-278.

Findlay, S.E.G., M. L. Pace, and D. Lints.  1991.  Variability and transport of suspended sediment, particulate and dissolved organic carbon in the tidal freshwater Hudson River.  Biogeochemistry 12: 35-55.

Pace, M.L., and E. Funke. 1991.  Regulation of planktonic microbial communities by nutrients and herbivores.  Ecology 72: 72: 904-914.

Baines, S.B., and M.L. Pace.  1991.  The production of dissolved organic matter by phytoplankton and its importance to bacteria: patterns across marine and freshwater systems.  Limnology and Oceanography 36: 1078-1090.

Pace, M.L.  1991.  Summary of the third Cary Conference on comparative analyses of ecosystems, p. 361-368.  In J.J. Cole, G.M. Lovett, and S.E.G. Findlay [eds.]  Comparative analysis of ecosystems: Patterns, mechanisms, and theories.  Springer-Verlag.

Pace, M.L., G.B. McManus, and S.E.G. Findlay.  1990.  Plankton community structure determines the fate of bacterial production in a temperate lake.  Limnology and Oceanography 35: 795-808.

Pernie, G.L., D. Scavia, M.L. Pace, and H.J. Carrick.  1990.  Micrograzer impact and substrate limitation of bacterioplankton in Lake Michigan.  Canadian Journal of Fisheries and Aquatic Science 47: 1836-1841.

Pace, M.L. and J.J. Cole.  1989.  What questions, systems, or phenomena warrant long-term ecological study?  p. 183-185.  In G.E. Likens [ed.] Long-term studies in ecology: Approaches and alternatives.  Springer-Verlag.

Pace, M.L.  1988.  Bacterial mortality and the fate of bacterial production.  Hydrobiologia 159: 41-49.

Porter, K.G., H. Paerl, R. Hodson, M. Pace, J. Priscu, B. Riemann, D. Scavia, and J. Stockner.  1988.  Microbial interactions, p. 209-227.  In S.R. Carpenter [ed.] Complex interactions in lake communities.  Springer-Verlag.

Cole, J.J., S.E.G. Findlay, and M.L. Pace.  1988.  Bacterial production in fresh and saltwater ecosystems: a cross-system overview.  Marine Ecology Progress Series 43: 1-10.

Taylor, G.T., and M.L. Pace. 1987.  Validity of eukaryote inhibitors for assessing production and grazing mortality of marine picoplankton.  Applied and Environmental Microbiology 53: 119-128.

Pace, M.L., G.A. Knauer, D.M. Karl, and J.H. Martin.  1987.  Primary production, new production and vertical flux in the eastern Pacific Ocean.  Nature 325: 803-804.

Pace, M.L., and M.D. Bailiff.  1987.  Evaluation of a fluorescent microsphere technique for measuring grazing rates of phagotrophic microorganisms.  Marine Ecology Progress Series 40: 185-193.

Pace, M.L.  1986.  An empirical analysis of zooplankton community structure.  Limnology and Oceanography 31: 45-55.

Taylor, G.T., D.M. Karl, and M.L. Pace.  1986.  Impact of bacteria and zooflagellates on the composition of sinking particles: an in situ experiment.  Marine Ecology Progress Series 29: 141-155.

Porter, K.G., B.F. Sherr, E.B. Sherr, M.L. Pace, and R.W. Sanders.  1985.  Protozoans in planktonic food webs.  Journal of Protozoology 32: 409-414.

Pace, M.L., J.E. Glasser, and L.R. Pomeroy.  1984.  A simulation analysis of continental shelf food webs.  Marine Biology 82: 47-63.

Pace, M.L., K.G. Porter, and Y.S. Feig.  1984.  Life history variation within a parthenogenetic population of Daphnia parvula (Crustacea, Cladocera).  Oecologia 63: 43-51.

Pace, M.L.  1984.  Zooplankton community structure but not biomass influences the phosphorus-chlorophyll relationship.  Canadian Journal of Fisheries and Aquatic Science 41: 1089-1096.

Orcutt, Jr., J.D., and M.L. Pace.  1984.  Seasonal dynamics of rotifer and crustacean zooplankton populations in a eutrophic monomictic lake with a note on rotifer sampling techniques.  Hydrobiologia 119: 73-80.

Pace, M.L., K.G. Porter, and Y.S. Feig.  1983.  Species- and age-specific differences in bacterial resource utilization by two co-occurring cladocerans.  Ecology 64: 1145-1156.

Pace, M.L.  1982.  Planktonic ciliates: their distribution, abundance, and relationship to microbial resources in a monomictic lake.  Canadian Journal of Fisheries and Aquatic Science 39: 1106-1116.

Pace, M.L., and J.D. Orcutt, Jr.  1981.  The relative importance of protozoans, rotifers, and crustaceans in a freshwater zooplankton community.  Limnology and Oceanography 26: 822-830.

Montague, C.L., S.M. Bunker, E.B. Haines, M.L. Pace, R.L. Wetzel.  1981.  Aquatic macroconsumers, p. 69-85.  In L.R. Pomeroy and R.G. Wiegert [eds.] Ecology of a Salt Marsh. Springer Verlag.

Pace, M.L., S. Shimmel, and W.M. Darley.  1979.  The effect of grazing by a gastropod, Nassarius obsoletus, on the benthic microbial community of a salt marsh mudflat.  Estuarine and Coastal Marine Science 9: 121-134.

Porter, K.G., M.L. Pace, and J.F. Battey.  1979.  Ciliate protozoans as links in freshwater planktonic food chains.  Nature 277: 563-565.